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iss-preprocess 0.2.1 documentation
iss-preprocess 0.2.1 documentation

Contents:

  • Getting started
  • Crunch the data
  • Registration
  • Calling spots
  • Channel brightness and illumination correction
  • Bleedthrough matrix estimation
  • Calling various spots
  • Detecting hybridisation spots
  • Cell segmentation
  • Detection mCherry cells

API reference:

  • iss_preprocess package
    • iss_preprocess.call package
    • iss_preprocess.config package
    • iss_preprocess.coppafish package
    • iss_preprocess.diagnostics package
    • iss_preprocess.image package
    • iss_preprocess.io package
    • iss_preprocess.pipeline package
    • iss_preprocess.reg package
    • iss_preprocess.segment package
    • iss_preprocess.vis package
  • Flowcharts legends
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